3D structure

PDB id
8C94 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UGACGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8C94_037 not in the Motif Atlas
Homologous match to HL_5J7L_190
Geometric discrepancy: 0.2839
The information below is about HL_5J7L_190
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

8C94|1|A|U|2356
8C94|1|A|G|2357
8C94|1|A|A|2358
8C94|1|A|C|2359
8C94|1|A|G|2360
8C94|1|A|G|2361

Current chains

Chain A
23S rRNA

Nearby chains

Chain W
50S ribosomal protein L27

Coloring options:


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