HL_8C95_029

3D structure

PDB id

8C95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.92 Å

Loop

Sequence

CAGACUCAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C95_029 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3962

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8C95|1|A|C|1270
8C95|1|A|A|2003
8C95|1|A|G|2004
8C95|1|A|A|2005
8C95|1|A|C|2006
8C95|1|A|U|2007
8C95|1|A|C|2008
8C95|1|A|A|2009
8C95|1|A|G|2010

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22