HL_8C97_036

3D structure

PDB id

8C97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.07 Å

Loop

Sequence

CCGGCGAGGG

Length

10 nucleotides

Bulged bases

8C97|1|A|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C97_036 not in the Motif Atlas

Geometric match to HL_6NTA_138

Geometric discrepancy: 0.3709

The information below is about HL_6NTA_138

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

46

Unit IDs

8C97|1|A|C|486
8C97|1|A|C|487
8C97|1|A|G|488
8C97|1|A|G|489
8C97|1|A|C|490
8C97|1|A|G|491
8C97|1|A|A|492
8C97|1|A|G|493
8C97|1|A|G|494
8C97|1|A|G|495

Current chains

Chain A

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L22