HL_8C9B_007

3D structure

PDB id

8C9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

5.9 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

8C9B|1|A|C|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C9B_007 not in the Motif Atlas

Homologous match to HL_5J7L_140

Geometric discrepancy: 0.4296

The information below is about HL_5J7L_140

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_62934.1

Basepair signature

cWW-tSH-F

Number of instances in this motif group

2

Unit IDs

8C9B|1|A|C|225
8C9B|1|A|A|226
8C9B|1|A|A|227
8C9B|1|A|C|228
8C9B|1|A|C|229
8C9B|1|A|G|230

Current chains

Chain A

23S rRNA

Nearby chains