HL_8C9B_011

3D structure

PDB id

8C9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

5.9 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8C9B|1|A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C9B_011 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2533

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8C9B|1|A|A|382
8C9B|1|A|C|383
8C9B|1|A|A|384
8C9B|1|A|C|385
8C9B|1|A|G|386
8C9B|1|A|U|387
8C9B|1|A|G|388
8C9B|1|A|G|389
8C9B|1|A|U|390
8C9B|1|A|A|391
8C9B|1|A|U|392

Current chains

Chain A

23S rRNA

Nearby chains