HL_8C9C_004

3D structure

PDB id

8C9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

6.62 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8C9C_004 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3475

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8C9C|1|A|G|136
8C9C|1|A|U|137
8C9C|1|A|U|138
8C9C|1|A|U|139
8C9C|1|A|C|140
8C9C|1|A|G|141
8C9C|1|A|A|142
8C9C|1|A|C|143

Current chains

Chain A

23S rRNA

Nearby chains