HL_8CAH_023

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

8CAH|1|2|U|1004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAH_023 not in the Motif Atlas

Geometric match to HL_5J7L_017

Geometric discrepancy: 0.0853

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8CAH|1|2|G|997
8CAH|1|2|A|998
8CAH|1|2|U|999
8CAH|1|2|C|1000
8CAH|1|2|A|1001
8CAH|1|2|G|1002
8CAH|1|2|A|1003
8CAH|1|2|U|1004
8CAH|1|2|A|1005
8CAH|1|2|C|1006
8CAH|1|2|C|1007

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Z

40S ribosomal protein S14-A

Chain e

40S ribosomal protein S26-A

Chain m

SUI1 isoform 1