HL_8CAH_027

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

8CAH|1|2|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAH_027 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.1149

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8CAH|1|2|G|1188
8CAH|1|2|A|1189
8CAH|1|2|C|1190
8CAH|1|2|U|1191
8CAH|1|2|C|1192
8CAH|1|2|A|1193
8CAH|1|2|A|1194
8CAH|1|2|C|1195
8CAH|1|2|A|1196
8CAH|1|2|C|1197

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S16-A

Chain K

40S ribosomal protein S20

Chain M

RPS29A isoform 1