HL_8CAH_028

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8CAH|1|2|G|1243

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAH_028 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.218

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8CAH|1|2|A|1238
8CAH|1|2|U|1239
8CAH|1|2|U|1240
8CAH|1|2|G|1241
8CAH|1|2|A|1242
8CAH|1|2|G|1243
8CAH|1|2|A|1244
8CAH|1|2|G|1245
8CAH|1|2|C|1246
8CAH|1|2|U|1247

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

RPS15 isoform 1

Chain M

RPS29A isoform 1

Chain N

40S ribosomal protein S31