HL_8CAI_016

3D structure

PDB id

8CAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin and Hygromycin B bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

8CAI|1|A|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAI_016 not in the Motif Atlas

Homologous match to HL_5J7L_017

Geometric discrepancy: 0.056

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8CAI|1|A|G|786
8CAI|1|A|A|787
8CAI|1|A|U|788
8CAI|1|A|U|789
8CAI|1|A|A|790
8CAI|1|A|G|791
8CAI|1|A|A|792
8CAI|1|A|U|793
8CAI|1|A|A|794
8CAI|1|A|C|795
8CAI|1|A|C|796

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11

Chain U

Small ribosomal subunit protein bS21