HL_8CAM_016

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

8CAM|1|a|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAM_016 not in the Motif Atlas

Geometric match to HL_2NUE_001

Geometric discrepancy: 0.2672

The information below is about HL_2NUE_001

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8CAM|1|a|C|544
8CAM|1|a|U|545
8CAM|1|a|U|546
8CAM|1|a|A|547
8CAM|1|a|G|548
8CAM|1|a|G|549

Current chains

Chain a

23S rRNA

Nearby chains

Chain q

Large ribosomal subunit protein bL21