HL_8CAM_064

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8CAM|1|a|G|2751, 8CAM|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAM_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0603

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8CAM|1|a|C|2745
8CAM|1|a|U|2746
8CAM|1|a|G|2747
8CAM|1|a|A|2748
8CAM|1|a|A|2749
8CAM|1|a|A|2750
8CAM|1|a|G|2751
8CAM|1|a|C|2752
8CAM|1|a|A|2753
8CAM|1|a|U|2754
8CAM|1|a|C|2755
8CAM|1|a|U|2756
8CAM|1|a|A|2757
8CAM|1|a|A|2758
8CAM|1|a|G|2759

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain g

Large ribosomal subunit protein uL6

Chain i

Large ribosomal subunit protein uL13