HL_8CAS_030

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

8CAS|1|2|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAS_030 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.1228

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8CAS|1|2|G|1188
8CAS|1|2|A|1189
8CAS|1|2|C|1190
8CAS|1|2|U|1191
8CAS|1|2|C|1192
8CAS|1|2|A|1193
8CAS|1|2|A|1194
8CAS|1|2|C|1195
8CAS|1|2|A|1196
8CAS|1|2|C|1197

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Transfer RNA; tRNA

Chain A

Eukaryotic translation initiation factor 4C

Chain H

40S ribosomal protein S16-A

Chain L

40S ribosomal protein S20