HL_8CAS_031

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8CAS|1|2|G|1243, 8CAS|1|2|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CAS_031 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.2137

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8CAS|1|2|A|1238
8CAS|1|2|U|1239
8CAS|1|2|U|1240
8CAS|1|2|G|1241
8CAS|1|2|A|1242
8CAS|1|2|G|1243
8CAS|1|2|A|1244
8CAS|1|2|G|1245
8CAS|1|2|C|1246
8CAS|1|2|U|1247

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

RPS15 isoform 1

Chain N

RPS29A isoform 1

Chain O

40S ribosomal protein S31