HL_8CBJ_006

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

8CBJ|1|2|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CBJ_006 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.1319

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8CBJ|1|2|G|243
8CBJ|1|2|A|244
8CBJ|1|2|U|245
8CBJ|1|2|G|246
8CBJ|1|2|A|247
8CBJ|1|2|U|248
8CBJ|1|2|U|249
8CBJ|1|2|C|250

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-B

Chain G

40S ribosomal protein S6-B

Chain L

40S ribosomal protein S11-A