HL_8CBJ_019
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUUUUGUUGGUUUCU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CBJ_019 not in the Motif Atlas
- Geometric match to HL_4V88_205
- Geometric discrepancy: 0.2301
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8CBJ|1|2|A|829
8CBJ|1|2|U|830
8CBJ|1|2|U|831
8CBJ|1|2|U|832
8CBJ|1|2|U|833
8CBJ|1|2|G|834
8CBJ|1|2|U|835
8CBJ|1|2|U|836
8CBJ|1|2|G|837
8CBJ|1|2|G|838
8CBJ|1|2|U|839
8CBJ|1|2|U|840
8CBJ|1|2|U|841
8CBJ|1|2|C|842
8CBJ|1|2|U|843
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S6-B
- Chain L
- 40S ribosomal protein S11-A
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