HL_8CBJ_020

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CBJ_020 not in the Motif Atlas

Geometric match to HL_4LFB_015

Geometric discrepancy: 0.3433

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8CBJ|1|2|A|900
8CBJ|1|2|G|901
8CBJ|1|2|G|902
8CBJ|1|2|U|903
8CBJ|1|2|G|904
8CBJ|1|2|A|905
8CBJ|1|2|A|906
8CBJ|1|2|A|907
8CBJ|1|2|U|908
8CBJ|1|2|U|909

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14-A

Chain h

Pre-rRNA-processing protein PNO1