HL_8CCS_048

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

GUA(A2M)CUAUGAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CCS_048 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.1194

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8CCS|1|AA|G|2253
8CCS|1|AA|U|2254
8CCS|1|AA|A|2255
8CCS|1|AA|A2M|2256
8CCS|1|AA|C|2257
8CCS|1|AA|U|2258
8CCS|1|AA|A|2259
8CCS|1|AA|U|2260
8CCS|1|AA|G|2261
8CCS|1|AA|A|2262
8CCS|1|AA|C|2263

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Bb

Transfer RNA; tRNA

Chain Dd

Messenger RNA

Chain c

Small subunit ribosomal RNA; SSU rRNA