HL_8CDL_024

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_024 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.1103

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8CDL|1|AA|C|1076
8CDL|1|AA|U|1077
8CDL|1|AA|U|1078
8CDL|1|AA|A|1079
8CDL|1|AA|A|1080
8CDL|1|AA|U|1081
8CDL|1|AA|U|1082
8CDL|1|AA|G|1083

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L21-A

Chain HH

60S ribosomal protein L5

Chain N

60S ribosomal protein L29