HL_8CDL_028

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_028 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.3179

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8CDL|1|AA|U|1267
8CDL|1|AA|G|1268
8CDL|1|AA|U|1269
8CDL|1|AA|A|1270
8CDL|1|AA|A|1271
8CDL|1|AA|C|1272
8CDL|1|AA|A|1273
8CDL|1|AA|A|1274

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain DD

60S acidic ribosomal protein P0

Chain Ee

60S ribosomal protein L12-A