3D structure

PDB id
8CDL (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
CGCAGCAG
Length
8 nucleotides
Bulged bases
8CDL|1|AA|C|1846, 8CDL|1|AA|G|1848, 8CDL|1|AA|A|1850
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CDL_041 not in the Motif Atlas
Homologous match to HL_8C3A_041
Geometric discrepancy: 0.0473
The information below is about HL_8C3A_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56817.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

8CDL|1|AA|C|1844
8CDL|1|AA|G|1845
8CDL|1|AA|C|1846
8CDL|1|AA|A|1847
8CDL|1|AA|G|1848
8CDL|1|AA|C|1849
8CDL|1|AA|A|1850
8CDL|1|AA|G|1851

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain B
60S ribosomal protein L17-A
Chain GG
60S ribosomal protein L4-A
Chain V
60S ribosomal protein L37-A
Chain X
60S ribosomal protein L39

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1299 s