HL_8CDL_045

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UCUAAUU(1MA)AAA

Length

11 nucleotides

Bulged bases

8CDL|1|AA|A|2138, 8CDL|1|AA|A|2139, 8CDL|1|AA|U|2140, 8CDL|1|AA|A|2144

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_045 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.0845

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8CDL|1|AA|U|2135
8CDL|1|AA|C|2136
8CDL|1|AA|U|2137
8CDL|1|AA|A|2138
8CDL|1|AA|A|2139
8CDL|1|AA|U|2140
8CDL|1|AA|U|2141
8CDL|1|AA|1MA|2142
8CDL|1|AA|A|2143
8CDL|1|AA|A|2144
8CDL|1|AA|A|2145

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain V

60S ribosomal protein L37-A