3D structure

PDB id
8CDL (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
AGCAGAAU
Length
8 nucleotides
Bulged bases
8CDL|1|AA|G|2898
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CDL_061 not in the Motif Atlas
Homologous match to HL_8C3A_063
Geometric discrepancy: 0.0836
The information below is about HL_8C3A_063
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_79150.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
12

Unit IDs

8CDL|1|AA|A|2897
8CDL|1|AA|G|2898
8CDL|1|AA|C|2899
8CDL|1|AA|A|2900
8CDL|1|AA|G|2901
8CDL|1|AA|A|2902
8CDL|1|AA|A|2903
8CDL|1|AA|U|2904

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain LL
60S ribosomal protein L9-A
Chain Y
Ubiquitin-60S ribosomal protein L40

Coloring options:


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