HL_8CDL_088

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

8CDL|1|c|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_088 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.1186

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

8CDL|1|c|G|330
8CDL|1|c|A|331
8CDL|1|c|U|332
8CDL|1|c|A|333
8CDL|1|c|G|334
8CDL|1|c|U|335
8CDL|1|c|G|336
8CDL|1|c|G|337
8CDL|1|c|C|338

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain l

40S ribosomal protein S8-B

Chain o

40S ribosomal protein S11-A