HL_8CDL_105

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

8CDL|1|c|G|1243, 8CDL|1|c|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDL_105 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.1864

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8CDL|1|c|A|1238
8CDL|1|c|U|1239
8CDL|1|c|U|1240
8CDL|1|c|G|1241
8CDL|1|c|A|1242
8CDL|1|c|G|1243
8CDL|1|c|A|1244
8CDL|1|c|G|1245
8CDL|1|c|C|1246
8CDL|1|c|U|1247

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 5

HLJ1_G0030400.mRNA.1.CDS.1

Chain 8

Ubiquitin-40S ribosomal protein S31

Chain r

40S ribosomal protein S15