3D structure

PDB id
8CDL (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
CUUAAUUG
Length
8 nucleotides
Bulged bases
8CDL|1|c|U|1314
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CDL_107 not in the Motif Atlas
Homologous match to HL_4V88_215
Geometric discrepancy: 0.0982
The information below is about HL_4V88_215
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

8CDL|1|c|C|1309
8CDL|1|c|U|1310
8CDL|1|c|U|1311
8CDL|1|c|A|1312
8CDL|1|c|A|1313
8CDL|1|c|U|1314
8CDL|1|c|U|1315
8CDL|1|c|G|1316

Current chains

Chain c
18S ribosomal RNA

Nearby chains

Chain t
40S ribosomal protein S17-A

Coloring options:


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