HL_8CDR_088

3D structure

PDB id

8CDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

8CDR|1|c|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CDR_088 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.0909

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8CDR|1|c|G|243
8CDR|1|c|A|244
8CDR|1|c|U|245
8CDR|1|c|G|246
8CDR|1|c|A|247
8CDR|1|c|U|248
8CDR|1|c|U|249
8CDR|1|c|C|250

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain h

40S ribosomal protein S4-A

Chain o

40S ribosomal protein S11-A