HL_8CEH_028
3D structure
- PDB id
- 8CEH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.05 Å
Loop
- Sequence
- UGUAACAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CEH_028 not in the Motif Atlas
- Homologous match to HL_8C3A_028
- Geometric discrepancy: 0.2054
- The information below is about HL_8C3A_028
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
8CEH|1|AA|U|1267
8CEH|1|AA|G|1268
8CEH|1|AA|U|1269
8CEH|1|AA|A|1270
8CEH|1|AA|A|1271
8CEH|1|AA|C|1272
8CEH|1|AA|A|1273
8CEH|1|AA|A|1274
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain Aa
- Elongation factor 2
- Chain DD
- 60S acidic ribosomal protein P0
- Chain Ee
- 60S ribosomal protein L12-A
- Chain Y
- Ubiquitin-60S ribosomal protein L40
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