HL_8CEH_106
3D structure
- PDB id
- 8CEH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.05 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 8CEH|1|c|G|1243, 8CEH|1|c|G|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CEH_106 not in the Motif Atlas
- Homologous match to HL_4V88_213
- Geometric discrepancy: 0.2028
- The information below is about HL_4V88_213
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
8CEH|1|c|A|1238
8CEH|1|c|U|1239
8CEH|1|c|U|1240
8CEH|1|c|G|1241
8CEH|1|c|A|1242
8CEH|1|c|G|1243
8CEH|1|c|A|1244
8CEH|1|c|G|1245
8CEH|1|c|C|1246
8CEH|1|c|U|1247
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain 8
- Ubiquitin-40S ribosomal protein S31
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain r
- 40S ribosomal protein S15
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