HL_8CF5_024

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8CF5|1|AA|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_024 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.0983

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8CF5|1|AA|C|1076
8CF5|1|AA|U|1077
8CF5|1|AA|U|1078
8CF5|1|AA|A|1079
8CF5|1|AA|A|1080
8CF5|1|AA|U|1081
8CF5|1|AA|U|1082
8CF5|1|AA|G|1083

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L21-A

Chain HH

60S ribosomal protein L5

Chain N

60S ribosomal protein L29