HL_8CF5_028

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_028 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.2478

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8CF5|1|AA|U|1267
8CF5|1|AA|G|1268
8CF5|1|AA|U|1269
8CF5|1|AA|A|1270
8CF5|1|AA|A|1271
8CF5|1|AA|C|1272
8CF5|1|AA|A|1273
8CF5|1|AA|A|1274

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Aa

Elongation factor 2

Chain Ee

60S ribosomal protein L12-A

Chain Y

Ubiquitin-60S ribosomal protein L40