HL_8CF5_048

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

GUA(A2M)CUAUGAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_048 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.1263

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8CF5|1|AA|G|2253
8CF5|1|AA|U|2254
8CF5|1|AA|A|2255
8CF5|1|AA|A2M|2256
8CF5|1|AA|C|2257
8CF5|1|AA|U|2258
8CF5|1|AA|A|2259
8CF5|1|AA|U|2260
8CF5|1|AA|G|2261
8CF5|1|AA|A|2262
8CF5|1|AA|C|2263

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Bb

Transfer RNA; tRNA

Chain Dd

Messenger RNA

Chain c

Small subunit ribosomal RNA; SSU rRNA