HL_8CF5_054

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

U(UR3)AAACG(A2M)UAACG

Length

13 nucleotides

Bulged bases

8CF5|1|AA|A|2637, 8CF5|1|AA|C|2644

QA status

Modified nucleotides: UR3, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_054 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.0714

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8CF5|1|AA|U|2633
8CF5|1|AA|UR3|2634
8CF5|1|AA|A|2635
8CF5|1|AA|A|2636
8CF5|1|AA|A|2637
8CF5|1|AA|C|2638
8CF5|1|AA|G|2639
8CF5|1|AA|A2M|2640
8CF5|1|AA|U|2641
8CF5|1|AA|A|2642
8CF5|1|AA|A|2643
8CF5|1|AA|C|2644
8CF5|1|AA|G|2645

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L21-A

Chain MM

60S ribosomal protein L10

Chain N

60S ribosomal protein L29