HL_8CF5_060

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

8CF5|1|AA|U|2842, 8CF5|1|AA|U|2843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_060 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.1484

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8CF5|1|AA|C|2840
8CF5|1|AA|G|2841
8CF5|1|AA|U|2842
8CF5|1|AA|U|2843
8CF5|1|AA|C|2844
8CF5|1|AA|A|2845
8CF5|1|AA|U|2846
8CF5|1|AA|A|2847
8CF5|1|AA|G|2848

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Aa

Elongation factor 2

Chain MM

60S ribosomal protein L10

Chain Y

Ubiquitin-60S ribosomal protein L40