HL_8CF5_061

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

8CF5|1|AA|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CF5_061 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.1039

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8CF5|1|AA|A|2897
8CF5|1|AA|G|2898
8CF5|1|AA|C|2899
8CF5|1|AA|A|2900
8CF5|1|AA|G|2901
8CF5|1|AA|A|2902
8CF5|1|AA|A|2903
8CF5|1|AA|U|2904

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Aa

Elongation factor 2

Chain LL

RPL9A isoform 1

Chain Y

Ubiquitin-60S ribosomal protein L40