HL_8CF5_076
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 8CF5|1|CC|C|84, 8CF5|1|CC|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CF5_076 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.4635
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8CF5|1|CC|U|69
8CF5|1|CC|G|70
8CF5|1|CC|A|71
8CF5|1|CC|A|72
8CF5|1|CC|U|73
8CF5|1|CC|U|74
8CF5|1|CC|G|75
8CF5|1|CC|C|76
8CF5|1|CC|A|77
8CF5|1|CC|G|78
8CF5|1|CC|A|79
8CF5|1|CC|A|80
8CF5|1|CC|U|81
8CF5|1|CC|U|82
8CF5|1|CC|C|83
8CF5|1|CC|C|84
8CF5|1|CC|G|85
8CF5|1|CC|U|86
8CF5|1|CC|G|87
8CF5|1|CC|A|88
8CF5|1|CC|A|89
Current chains
- Chain CC
- 5.8S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- 60S ribosomal protein L26-A
- Chain T
- 60S ribosomal protein L35-A
- Chain V
- 60S ribosomal protein L37-A
- Chain X
- 60S ribosomal protein L39
Coloring options: