3D structure

PDB id
8CF8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eravacycline bound to the 30S head
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GAU(2MG)(5MC)AACGC
Length
10 nucleotides
Bulged bases
8CF8|1|A|A|968, 8CF8|1|A|G|971
QA status
Modified nucleotides: 2MG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CF8_001 not in the Motif Atlas
Homologous match to HL_4LFB_021
Geometric discrepancy: 0.1054
The information below is about HL_4LFB_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8CF8|1|A|G|963
8CF8|1|A|A|964
8CF8|1|A|U|965
8CF8|1|A|2MG|966
8CF8|1|A|5MC|967
8CF8|1|A|A|968
8CF8|1|A|A|969
8CF8|1|A|C|970
8CF8|1|A|G|971
8CF8|1|A|C|972

Current chains

Chain A
16S rRNA

Nearby chains

Chain I
Small ribosomal subunit protein uS9
Chain J
Small ribosomal subunit protein uS10
Chain M
Small ribosomal subunit protein uS13

Coloring options:


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