HL_8CG8_124
3D structure
- PDB id
- 8CG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- GAUCAGAUAC(OMC)
- Length
- 11 nucleotides
- Bulged bases
- 8CG8|1|c|U|1004
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CG8_124 not in the Motif Atlas
- Homologous match to HL_8C3A_213
- Geometric discrepancy: 0.2371
- The information below is about HL_8C3A_213
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8CG8|1|c|G|997
8CG8|1|c|A|998
8CG8|1|c|U|999
8CG8|1|c|C|1000
8CG8|1|c|A|1001
8CG8|1|c|G|1002
8CG8|1|c|A|1003
8CG8|1|c|U|1004
8CG8|1|c|A|1005
8CG8|1|c|C|1006
8CG8|1|c|OMC|1007
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 2
- 40S ribosomal protein S26
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Bb
- Transfer RNA; tRNA
- Chain Cc
- Transfer RNA; tRNA
- Chain Dd
- Messenger RNA
- Chain q
- 40S ribosomal protein S14-A
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