HL_8CGD_012

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8CGD|1|a|G|386, 8CGD|1|a|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGD_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0496

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8CGD|1|a|A|382
8CGD|1|a|C|383
8CGD|1|a|A|384
8CGD|1|a|C|385
8CGD|1|a|G|386
8CGD|1|a|U|387
8CGD|1|a|G|388
8CGD|1|a|G|389
8CGD|1|a|U|390
8CGD|1|a|A|391
8CGD|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

Large ribosomal subunit protein bL28