HL_8CGD_022
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- U(1MG)(PSU)(5MU)GAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 8CGD|1|a|A|751, 8CGD|1|a|A|752
- QA status
- Modified nucleotides: 1MG, PSU, 5MU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CGD_022 not in the Motif Atlas
- Homologous match to HL_5J7L_155
- Geometric discrepancy: 0.0415
- The information below is about HL_5J7L_155
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88205.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
8CGD|1|a|U|744
8CGD|1|a|1MG|745
8CGD|1|a|PSU|746
8CGD|1|a|5MU|747
8CGD|1|a|G|748
8CGD|1|a|A|749
8CGD|1|a|A|750
8CGD|1|a|A|751
8CGD|1|a|A|752
8CGD|1|a|A|753
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL34
- Chain d
- Large ribosomal subunit protein uL3
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
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