3D structure

PDB id
8CGI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pentacycline TP038 bound to the 30S head
Experimental method
ELECTRON MICROSCOPY
Resolution
1.89 Å

Loop

Sequence
GAU(2MG)(5MC)AACGC
Length
10 nucleotides
Bulged bases
8CGI|1|A|A|968, 8CGI|1|A|G|971
QA status
Modified nucleotides: 2MG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CGI_001 not in the Motif Atlas
Homologous match to HL_4LFB_021
Geometric discrepancy: 0.0955
The information below is about HL_4LFB_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8CGI|1|A|G|963
8CGI|1|A|A|964
8CGI|1|A|U|965
8CGI|1|A|2MG|966
8CGI|1|A|5MC|967
8CGI|1|A|A|968
8CGI|1|A|A|969
8CGI|1|A|C|970
8CGI|1|A|G|971
8CGI|1|A|C|972

Current chains

Chain A
16S rRNA

Nearby chains

Chain I
Small ribosomal subunit protein uS9
Chain J
Small ribosomal subunit protein uS10
Chain M
Small ribosomal subunit protein uS13
Chain N
Small ribosomal subunit protein uS14

Coloring options:


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