HL_8CGK_012

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8CGK|1|a|G|386, 8CGK|1|a|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGK_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.047

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8CGK|1|a|A|382
8CGK|1|a|C|383
8CGK|1|a|A|384
8CGK|1|a|C|385
8CGK|1|a|G|386
8CGK|1|a|U|387
8CGK|1|a|G|388
8CGK|1|a|G|389
8CGK|1|a|U|390
8CGK|1|a|A|391
8CGK|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

Large ribosomal subunit protein bL28