HL_8CGN_041

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

8CGN|1|AA|C|1846, 8CGN|1|AA|G|1848, 8CGN|1|AA|A|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_041 not in the Motif Atlas

Homologous match to HL_8C3A_041

Geometric discrepancy: 0.0511

The information below is about HL_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8CGN|1|AA|C|1844
8CGN|1|AA|G|1845
8CGN|1|AA|C|1846
8CGN|1|AA|A|1847
8CGN|1|AA|G|1848
8CGN|1|AA|C|1849
8CGN|1|AA|A|1850
8CGN|1|AA|G|1851

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L17-A

Chain GG

60S ribosomal protein L4-A

Chain V

60S ribosomal protein L37-A

Chain X

60S ribosomal protein L39