HL_8CGN_046

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

UCUAAUU(1MA)AAA

Length

11 nucleotides

Bulged bases

8CGN|1|AA|A|2138, 8CGN|1|AA|A|2139, 8CGN|1|AA|U|2140, 8CGN|1|AA|A|2144

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGN_046 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.0651

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8CGN|1|AA|U|2135
8CGN|1|AA|C|2136
8CGN|1|AA|U|2137
8CGN|1|AA|A|2138
8CGN|1|AA|A|2139
8CGN|1|AA|U|2140
8CGN|1|AA|U|2141
8CGN|1|AA|1MA|2142
8CGN|1|AA|A|2143
8CGN|1|AA|A|2144
8CGN|1|AA|A|2145

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain V

60S ribosomal protein L37-A