HL_8CGN_117
3D structure
- PDB id
- 8CGN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-rotated 80S S. cerevisiae ribosome with ligands
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.28 Å
Loop
- Sequence
- (A2M)CGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 8CGN|1|AA|U|879, 8CGN|1|AA|A|883, 8CGN|1|AA|A|884
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CGN_117 not in the Motif Atlas
- Homologous match to HL_8P9A_132
- Geometric discrepancy: 0.0858
- The information below is about HL_8P9A_132
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
8CGN|1|AA|A2M|876
8CGN|1|AA|C|877
8CGN|1|AA|G|878
8CGN|1|AA|U|879
8CGN|1|AA|G|880
8CGN|1|AA|C|881
8CGN|1|AA|A|882
8CGN|1|AA|A|883
8CGN|1|AA|A|884
8CGN|1|AA|U|885
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L17-A
- Chain FF
- 60S ribosomal protein L3
- Chain V
- 60S ribosomal protein L37-A
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