3D structure

PDB id
8CGV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tiamulin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.66 Å

Loop

Sequence
ACACGUGGUAU
Length
11 nucleotides
Bulged bases
8CGV|1|a|G|386, 8CGV|1|a|G|389
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8CGV_012 not in the Motif Atlas
Homologous match to HL_5J7L_145
Geometric discrepancy: 0.045
The information below is about HL_5J7L_145
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_91503.7
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

8CGV|1|a|A|382
8CGV|1|a|C|383
8CGV|1|a|A|384
8CGV|1|a|C|385
8CGV|1|a|G|386
8CGV|1|a|U|387
8CGV|1|a|G|388
8CGV|1|a|G|389
8CGV|1|a|U|390
8CGV|1|a|A|391
8CGV|1|a|U|392

Current chains

Chain a
23S rRNA

Nearby chains

Chain w
Large ribosomal subunit protein bL28

Coloring options:


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