HL_8CGV_012

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8CGV|1|a|G|386, 8CGV|1|a|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CGV_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.045

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8CGV|1|a|A|382
8CGV|1|a|C|383
8CGV|1|a|A|384
8CGV|1|a|C|385
8CGV|1|a|G|386
8CGV|1|a|U|387
8CGV|1|a|G|388
8CGV|1|a|G|389
8CGV|1|a|U|390
8CGV|1|a|A|391
8CGV|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

Large ribosomal subunit protein bL28