HL_8CIV_062

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CIV_062 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1177

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8CIV|1|AA|C|2840
8CIV|1|AA|G|2841
8CIV|1|AA|U|2842
8CIV|1|AA|U|2843
8CIV|1|AA|C|2844
8CIV|1|AA|A|2845
8CIV|1|AA|U|2846
8CIV|1|AA|A|2847
8CIV|1|AA|G|2848

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Aa

Elongation factor 2

Chain MM

60S ribosomal protein L10

Chain Y

Ubiquitin-60S ribosomal protein L40