HL_8CIV_077

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GUGUUCGAUCCAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CIV_077 not in the Motif Atlas

Homologous match to HL_5EL4_250

Geometric discrepancy: 0.5913

The information below is about HL_5EL4_250

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25222.2

Basepair signature

cWW-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8CIV|1|Bb|G|51
8CIV|1|Bb|U|52
8CIV|1|Bb|G|53
8CIV|1|Bb|U|54
8CIV|1|Bb|U|55
8CIV|1|Bb|C|56
8CIV|1|Bb|G|57
8CIV|1|Bb|A|58
8CIV|1|Bb|U|59
8CIV|1|Bb|C|60
8CIV|1|Bb|C|61
8CIV|1|Bb|A|62
8CIV|1|Bb|C|63

Current chains

Chain Bb

Transfer RNA Phe

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain MM

60S ribosomal protein L10

Chain NN

60S ribosomal protein L11-A