HL_8CIV_105
3D structure
- PDB id
- 8CIV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- GAC(B8N)CAACAC
- Length
- 10 nucleotides
- Bulged bases
- 8CIV|1|c|A|1196
- QA status
- Modified nucleotides: B8N
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8CIV_105 not in the Motif Atlas
- Homologous match to HL_8P9A_215
- Geometric discrepancy: 0.1828
- The information below is about HL_8P9A_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8CIV|1|c|G|1188
8CIV|1|c|A|1189
8CIV|1|c|C|1190
8CIV|1|c|B8N|1191
8CIV|1|c|C|1192
8CIV|1|c|A|1193
8CIV|1|c|A|1194
8CIV|1|c|C|1195
8CIV|1|c|A|1196
8CIV|1|c|C|1197
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain Bb
- Transfer RNA; tRNA
- Chain Cc
- Transfer RNA; tRNA
- Chain s
- 40S ribosomal protein S16-A
- Chain w
- 40S ribosomal protein S20
Coloring options: