HL_8CIV_124

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

(OMC)CAAGG

Length

6 nucleotides

Bulged bases

8CIV|1|c|A|416

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8CIV_124 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.1153

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

8CIV|1|c|OMC|414
8CIV|1|c|C|415
8CIV|1|c|A|416
8CIV|1|c|A|417
8CIV|1|c|G|418
8CIV|1|c|G|419

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L23-A

Chain j

40S ribosomal protein S6-A